Submit a TES task using the TES Wizard

To submit a TES task using the TES Wizard:

1. Login to the Submission Layer
2. Go to the Projects page.
3. From the list of projects select the Project you want to submit to.
4. Once in the Project page go to Submissions tab -> Create Submission -> TES Wizard.

The TES Wizard has three different modes:

Simple SQL Query

The Simple SQL Query TES Wizard mode creates a TES task that executes a Postgres SQL Runner container image. To submit a SQL query TES Task you need to set:

• Name
• Description (optional)
• TREs to submit to
• A SQL Query

Example Submission:

Custom Image

The Custom Image TES Wizard guides you through the construction of a Custom TES Task. Details on what a TES Task looks like can be found in the GA4GH TES API documentation. Enter the following information about the TES Task:

• Name
• Description (optional)
• TREs to submit to
• Data Input (optional)
  • Path
  • Type
• Data Output:
  • Path
  • Url
  • Type
• Executors:
  • Image: Name of the container image.
  • Commands: A sequence of program arguments to execute.
  • Working Directory: The working directory that the command will be executed in. If not defined, the system will default to the directory set by the container image.
  • Environment Variables: Enviromental variables to set within the container.

Example Submission:

Raw JSON

The Raw JSON Tes Wizard mode allows you to submit a TES message as a JSON payload.

Example Submission:

"tags": {
    "project": "Testing",
    "tres": "DEMO 01" // or "DEMO TRE 01|DEMO TRE 02"
}